ID   AC115276   standard; DNA; HTG; 7999 BP.
XX
AC   AC115276;
XX
SV   AC115276.4
XX
DT   18-MAR-2002 (Rel. 71, Created)
DT   15-SEP-2002 (Rel. 73, Last updated, Version 11)
XX
DE   Rattus norvegicus clone CH230-47P16, *** SEQUENCING IN PROGRESS ***, 6
DE   unordered pieces.
XX
KW   HTG; HTGS_PHASE1.
XX
OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-7999
RA   Muzny D.Marie., Metzker M.Lee., Abramzon S., Adams C., Alder J., Allen C.,
RA   Allen H., Alsbrooks S., Amin A., Anguiano D., Anyalebechi V., Aoyagi A.,
RA   Ayodeji M., Baca E., Baden H., Baldwin D., Bandaranaike D., Barber M.,
RA   Barnstead M., Benahmed F., Biswalo K., Blair J., Blankenburg K., Blyth P.,
RA   Brown M., Bryant N., Buhay C., Burch P., Burrell K., Calderon E.,
RA   Cardenas V., Carter K., Cavazos I., Ceasar H., Center A., Chacko J.,
RA   Chavez D., Chen G., Chen R., Chen Y., Chen Z., Chu J., Cleveland C.,
RA   Cockrell R., Cox C., Coyle M., Cree A., D'Souza L., Davila M.L., Davis C.,
RA   Davy-Carroll L., De Anda C., Dederich D., Delgado O., Denson S., Deramo C.,
RA   Ding Y., Dinh H., Divya K., Draper H., Dugan-Rocha S., Dunn A., Durbin K.,
RA   Duval B., Eaves K., Egan A., Escotto M., Eugene C., Evans C.A., Falls T.,
RA   Fan G., Fernandez S., Finley M., Flagg N., Forbes L., Foster M., Foster P.,
RA   Fraser C.M., Gabisi A., Ganta R., Garcia A., Garner T., Garza M.,
RA   Gebregeorgis E., Geer K., Gill R., Grady M., Guerra W., Guevara W.,
RA   Gunaratne P., Haaland W., Hamil C., Hamilton C., Hamilton K., Harvey Y.,
RA   Havlak P., Hawes A., Henderson N., Hernandez J., Hernandez R., Hines S.,
RA   Hladun S.L., Hodgson A., Hogues M., Hollins B., Howells S., Hulyk S.,
RA   Hume J., Idlebird D., Jackson A., Jackson L., Jacob L., Jiang H.,
RA   Johnson B., Johnson R., Jolivet A., Karpathy S., Kelly S., Kelly S.,
RA   Khan Z., King L., Kovar C., Kowis C., Kraft C.L., Lebow H., Levan J.,
RA   Lewis L., Li Z., Liu J., Liu J., Liu W., Liu Y., London P., Longacre S.,
RA   Lopez J., Lorensuhewa L., Loulseged H., Lozado R.J., Lu X., Ma J.,
RA   Maheshwari M., Mahindartne M., Mahmoud M., Malloy K., Mangum A., Mangum B.,
RA   Mapua P., Martin K., Martin R., Martinez E., Mawhiney S., Mcleod M.,
RA   Mcneill T., Meenen E., Milosavljevic A., Miner G., Minja E., Montemayor J.,
RA   Moore S., Morgan M., Morris K., Morris S., Munidasa M., Murphy M., Nair L.,
RA   Nankervis C., Neal D., Newton N., Nguyen N., Norris S., Nwaokelemeh O.,
RA   Okwuonu G., Olarnpunsagoon A., Pal S., Parks K., Pasternak S., Paul H.,
RA   Perez A., Perez L., Pfannkoch C., Plopper F., Poindexter A., Popovic D.,
RA   Primus E., Pu L.-L., Puazo M., Quiroz J., Rachlin E., Reeves K.,
RA   Regier M.A., Reigh R., Reilly B., Reilly M., Ren Y., Reuter M.,
RA   Richards S., Riggs F., Rives C., Rodkey T., Rojas A., Rose M., Rose R.,
RA   Ruiz S.J., Sanders W., Savery G., Scherer S., Scott G., Shatsman S.,
RA   Shen H., Shetty J., Shvartsbeyn A., Sisson I., Sitter C.D., Smajs D.,
RA   Sneed A., Sodergren E., Song X.-Z., Sorelle R., Sosa J., Steimle M.,
RA   Strong R., Sutton A., Svatek A., Tabor P., Taylor C., Taylor T., Thomas N.,
RA   Thomas S., Tingey A., Trejos Z., Usmani K., Valas R., Vera V.,
RA   Villasana D., Waldron L., Walker B., Wang J., Wang Q., Wang S., Warren J.,
RA   Warren R., Wei X., White F., Williams G., Willson R., Wleczyk R.,
RA   Wooden H., Worley K., Wright D., Wright R., Wu J., Yakub S., Yen J.,
RA   Yoon L., Yoon V., Yu F., Zhang J., Zhou J., Zhou X., Zhao S., Dunn D.,
RA   von Niederhausern A., Weiss R., Smith D.R., Holt R.A., Smith H.O.,
RA   Weinstock G., Gibbs R.A.;
RT   "Direct Submission";
RL   Unpublished.
XX
RN   [2]
RP   1-7999
RA   Worley K.C.;
RT   ;
RL   Submitted (16-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Human Genome Sequencing Center, Department of Molecular and Human Genetics,
RL   Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
XX
RN   [3]
RP   1-7999
RA   Rat Genome Sequencing Consortium;
RT   ;
RL   Submitted (12-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   Human Genome Sequencing Center, Department of Molecular and Human Genetics,
RL   Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
XX
CC   On Jul 14, 2002 this sequence version replaced gi:21240062.
CC   -------------- Genome Center
CC       Center: Baylor College of Medicine
CC       Center code: BCM
CC       Web site: http://www.hgsc.bcm.tmc.edu/
CC       Contact: hgsc-help@bcm.tmc.edu
CC   -------------- Project Information
CC       Center project name: GTHA
CC       Center clone name: CH230-47P16
CC   -------------- Summary Statistics
CC       Sequencing vector: Plasmid;
CC       Chemistry: Dye-terminator Big Dye: 100% of reads
CC       Assembly program: Phrap; version 0.990329
CC       Consensus quality: 0 bases at least Q40
CC       Consensus quality: 0 bases at least Q30
CC       Consensus quality: 0 bases at least Q20
CC   --------------
CC   * NOTE: Estimated insert size may differ from sequence length
CC   *   (see http://www.hgsc.bcm.tmc.edu/docs/Genbank_draft_data.html).
CC   * NOTE: This is a 'working draft' sequence. It currently
CC   * consists of 6 contigs. The true order of the pieces
CC   * is not known and their order in this sequence record is
CC   * arbitrary. Gaps between the contigs are represented as
CC   * runs of N, but the exact sizes of the gaps are unknown.
CC   * This record will be updated with the finished sequence
CC   * as soon as it is available and the accession number will
CC   * be preserved.
CC   *        1     1078: contig of 1078 bp in length
CC   *     1079     1178: gap of unknown length
CC   *     1179     2408: contig of 1230 bp in length
CC   *     2409     2508: gap of unknown length
CC   *     2509     3715: contig of 1207 bp in length
CC   *     3716     3815: gap of unknown length
CC   *     3816     5016: contig of 1201 bp in length
CC   *     5017     5116: gap of unknown length
CC   *     5117     6313: contig of 1197 bp in length
CC   *     6314     6413: gap of unknown length
CC   *     6414     7999: contig of 1586 bp in length.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..7999
FT                   /db_xref="taxon:10116"
FT                   /organism="Rattus norvegicus"
FT                   /clone="CH230-47P16"
XX
SQ   Sequence 7999 BP; 2310 A; 2114 C; 1720 G; 1318 T; 537 other;
     gacccccgcc gccgccgggg cgcccgggag agcggcccnn nccacagggg ggngacgccg        60
     nnnnnnnnnn nnnnnnnnnn nnnnnnacan aggttcccag aaaccttact aaagctcaaa       120
     acattttctg cacctcacac aataatagta ggagattgca acaccccacg tctcatcaat       180
     gtacagatcc tggaaacaga aattaaacag agacgtagag agactaagag aaggcatgag       240
     ccaaatggac ttaaccgata tttatagaac attctatcct aaagcaaaag gatatacatt       300
     cttctcagct cctgatggta ctttctccaa aattgaccat ataattgggc aaaaaaacgg       360
     gcatcaacag gtacagaaac atacaaataa tcccatgcat gctagcagac cacgatggcc       420
     taaagctagt cttcgataac cacaagggaa gaatggccac atataccggg gaagtcgaac       480
     aatgctacta ctcaatgata acctggcgga gggaagccta acgagaacac gtacacactt       540
     ctgagaattt aatgaaaatg aaggggagaa catacccgaa cttacgggac acaatgacag       600
     ctgcgctacg agcagaactc cgagctctga gaggctgcca caaacaccca gggagagagc       660
     atatgacaac agcttggaca gcatacccta aaagctctag aacgaagaca agccaagtac       720
     cccagggagg aggtcgaagg acgggaaggt gaagcgaacg acagagccgc aaaaccacgc       780
     cagagtaaaa gcagaaaacg gccctgacca aaaaaagcga accggaaacc acaaagtcgg       840
     gttctgtgga aaaagaccca cacaaaacaa gataccgcgc cctaggccag gactacgcgc       900
     agaggggcca cagataaggg gtgtccaaaa tgtgacgaag gccggaacag ggaacaaggc       960
     gaagccgcga ttgacaggaa atgcggagag gaagtgtcga ccaacgcacc cacaatcgtt      1020
     accaatcacc agacgcctaa cttccggcac aacacggcgc ataatctccg cacgacaann      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntg cagtcttcca cagagatagc      1200
     tttgctgtgt ggtcccccca agagataaat gaattaatat attagaagga taagggcttt      1260
     tattgaggat aaagctatgg tgtacctttc tttggctgac cagaatccag ggtcatctga      1320
     tgccagcccc ctccaccatg acacccaaac tccaccaacg agaccaaaga tgtgtgccac      1380
     aggtacatca nagtcaaggt cagcacttca tccgccttgg gccccaagat tggtccccag      1440
     catcggtttt cccaaaagtt ggcgacgaca tcgacatttt ttttggacac tcgacagcca      1500
     cgaggacgac agggacacag tcttctgccc gcccccccga ggggcgcagc catgcccgga      1560
     gctacgcgaa gccaggaaag gctagaaaaa caaagcacca cggaaaatcg cttttgactt      1620
     tcttcctaac aaacctggca ctagtcttta gccagaaacc ccttgtggaa ccattaaaga      1680
     gcacctgggt actgcactgc cagtgggatg cagtgtagat ggccaccttc ctcatgatgc      1740
     catagactga cacagccatg gtgttttttt attccagtcc taacagattg aagaccgatg      1800
     tttatacctg tgcctaaggg catggggggg gggccgtagc cccaccaaaa taagagaagc      1860
     aacacgacaa agcacggcca tagcagatca tccggcacac aacgggaatg acagcttttg      1920
     ggcggagtaa atgtatagca ccccatgccc cccaccccct agcgcctacc ggcctcgccc      1980
     ccgcaactac ccccggacgg cccatcccgc gccgcccgcg aacgccaata ggatccgcca      2040
     cagcggcccc caccagcccc ccgcccgccc gggcgccgcc cagagcgcag gccgaccggc      2100
     agagccaggc cacccaatgg tcagggcccg cgccgcagcg ggcaacacac acccgcccgc      2160
     gcgcgacgcc atacggtgcc cggcggcgca ggcccgaaga cccaaggaac ccgcgagagg      2220
     aaccgcgcgc ctgaaaaaac gcccgccccc ccgccgctag actgcccgcg cccaagacgg      2280
     ccaggaaggc gccgcggaca accccacaac gcaccgagga agacacggcg agccgggtac      2340
     gacacccccc accagatcgc acaccccggc cacaaaccgc gtacagaccg ccggccgcaa      2400
     ggcgcgggnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      2460
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncc gcctccactc      2520
     actctcgtta tttccgtctt cttttattac agtgtcgcgg tagggggctg tgacgtgggg      2580
     atcacgttgc ctggttgtaa tcggcgccat ccgtcttcct ctatcataaa ctcaactagg      2640
     gttgtcttgc actatgttgc cggagtgggg gggcgcgtca cgttggcgct ctattgggtt      2700
     ctcacatctc gtcgttatcc agccatctct tctcgctccc gcacggtgaa cggcgcggag      2760
     catgcgctag ctctatttgt tgagcgctga tcttgttaga ctctcgtctg tctctgccct      2820
     tacatttcct ctgccgctct tttccgcctc atcccgcgcc gcttcctgcc acgcaccacc      2880
     gctccgggtt gttgcccgcc gaccccacca gtttcgcaat ccgcggtttc tctcgaggcg      2940
     ttgcgccgcc agaccttcgg ggagccgtgc caaggcggtc tctctccggt tccggtgaaa      3000
     ccaagccttc ctcccgcctc cccccgaaat cggcccctcg ggcggcaacc cccttgcgcc      3060
     gcgtcttcgt acggtcctgc gcgcgtcgtg ccctgacgcc gctgtacagt cattcggcct      3120
     ccccgccctc acaacgctag ggtcctttcc cgcctacatg tgcctcgccc cgtctttccc      3180
     tgcccccgtt cgcgcgctat gggctcctct tgccccggaa ggtgttgctg ctcacttagt      3240
     catgggagtg agatcacagc cgttgtgcga gtccagtaag tgtcatcccg cacccttcaa      3300
     ctagcaccaa tagtaggaat gaagacaggc accataatca gtttttatgc tcaaaaaatg      3360
     gtctatctta catcattcat atgcaactat tactagctta gcaggaagag aggcacagtt      3420
     ctgcctgctg ttttagccat gcatcatgag gaagccttga aaaatgctat ggtttcagct      3480
     gtcaccccac cctaagaata tatgacagcc aaggacatgg tgggttctct atttgcagtc      3540
     actgccttac ttgcaggctg cccacagtca aaagatccag gagtaccttt tcaggagtgg      3600
     gatagctcct ataggggaat cctcccagaa agaagttcag aaactctgat gaactacttc      3660
     catcgatagc gcgtgtttgt gtccgccccc cccccccccc ncgatgcctt tttttnnnnn      3720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      3780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnacaga acctcctgat catttcatta      3840
     gatgctgaga atttttttga caaaattcaa caccccttca tgataaaagt cctgcgaaag      3900
     aataggaatt ctaggcccat acataaacat agtaaaagcc atatacagca aactagttgc      3960
     taacattaaa ctaaatggag agaaacttga agcaatccca ctaaaatcag ggactagaca      4020
     aggctgccca ctctctccct acttattcaa tatagttctt gaagttctag ccagagcaat      4080
     cagacaacaa aaggaaaaca aggagattca gattggtaaa gaagaagtca aaatatcact      4140
     ttttgcagat gatatgatac tatatttaag tgatcccaaa agttccacca gagaactact      4200
     acagctgata aacaacttca gcaaagtggc tggggataaa attaactcaa agaaatgggt      4260
     agccttcctc taaccgaaag agaaaggagc ccaggaaaga acttagggga aacagacacc      4320
     ctgtcgtagt aggaccccaa tcactacaaa agcaccatcg gtggggactt ctaacccggg      4380
     cgaggtagaa ggatcgtgga cgaaaagaga acttccacgc acactggagg aaaagcacaa      4440
     ttcgaaagaa agaccctcga gaaagagggg aaagaaacca tctccacggg gtacatgcaa      4500
     agtgggccgg ggcgtcaaga tgaacacgaa aagaaaaggg acccatattt tgaaccacaa      4560
     aacgcggaga catacaaacc atttcgcaaa tggtccagag caccgcagag caaagcaaag      4620
     tgctcccaaa cattactttt cgaaacggac tcttacgcaa gagagagccg agcagtgggc      4680
     cgaaactatc cgcgccgggg caatgcgctc agacgacacc cgcctggaac gatgattatc      4740
     caactttttt gttgcctaca tgtggatagg gatcttttct ggggagcaga atgcctagcg      4800
     cacccgggaa cccatagacg ctagccgtac gcaacgctgg agagggggat caacatactg      4860
     cgcgcggcga ctggggcgaa ggaagaagcg gagatgtggg agccacgggg cgcgaagagg      4920
     gagggcccac ccaaaggggt ctgcaaccct ctttgggggc cgccacttat gaaatgctag      4980
     cagcggagcg cgtcacagcg aagagctagc acgccgnnnn nnnnnnnnnn nnnnnnnnnn      5040
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      5100
     nnnnnnnnnn nnnnnngtcc tacggattat gtgggattcc acatgcaaca aaatagctag      5160
     cggatcactc agaaattcac tgcatggtga ggctttaatc ccggactaaa agccagcatc      5220
     attaacactt caccattgcc agtaacacat gtcaccactg actctgttac tatggtcacc      5280
     aaaacatctc cttccacccg atcaacatca ctgctgtccc tgcaaccaca gcctctactc      5340
     cgtctactcc tagctctgct atatgctctc tacattatat acgatcgacg cgatctgcac      5400
     ctcgaacgga cgaagcttac caagactaac aactggagta ctcgctaaca cgcccaacta      5460
     agactgcaga aacgcacata ccaggctctt gtataagtag accagcacga ggaacaagga      5520
     tccttataat agggcaaaca gtccgagata tcacccagcg cactgaaagg aggaccaata      5580
     agatgcccgc ggactaggaa gccatagcat ggactgcagc cggacataaa agaaacgcct      5640
     ggggacagag cggtaagcat atgacacgcg tcgtccccga ctaaagccac gttatgagac      5700
     caacgcacat acaaggaacg aaagcccgcg cccgccatgt gagcagaaag aaaacccccc      5760
     agcctcggcg gcatacaaac ccacaagcgc acgagagacg aactagaaac accgaaacgg      5820
     agaagcgaac aagcggacag ggaagagata ccaacagtcg gcaaccaccg acgaacaaca      5880
     gcaccaacag cgcaatcacg cagcacagaa gatcgcgggg gccaggacga gcactgacga      5940
     accgccggag gcgtcgcgcg acccgcgcca gcaacaagca gacgacacgg acagggaccc      6000
     agtaggacac ggaagaacaa gactacgcgc gccaaacccc cgctcgacac ntgagctcgt      6060
     gcgcgcagag aaagggaaat cgcacacacg acgaccgact acaatgagat agcccacaaa      6120
     aaggtgccag ggacgccgag cctagctgtg acgacgccac aacgtcacac atatgcacca      6180
     caccgcacac cacggctagc ccgcgaagnc gtgcagacgg agattagtag agtggccccc      6240
     gcgcgaacac acaacgcaca caactcaaga aggggcaggc gacgcgaccn gacgccagac      6300
     tgcgaaaact gacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      6360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntttgggg      6420
     ttcctaagga atataactcc acgacgggtt ccccctctac ttccacagca caaggataga      6480
     aagcaatttc ccaagaaaca agctgatgta gccattctaa ggtcgaataa aatcaacttt      6540
     caaccaaaag ttatcaacaa agataagaaa ggacatattc atcccaggaa agatccacca      6600
     agatgaactc tcaatcctga atatctatac tccaaataca agggcaccaa cattcataaa      6660
     aagaataagg ctcaaagcac acattgcacc tcacacaata atagcaggag acttcaacac      6720
     accactctca gcagtggaca gatcatggga aacagaaatt aaacagagac atagagagac      6780
     taagagaagt aatgaaccaa atggacttaa cggatattta tagaacattc taaccgaaaa      6840
     caaaaggata tgccttcttc ttagcacttt atggtacgtt ctccaaaatt aaccatataa      6900
     ttggtcataa aacaggcttc aacagataca gaaagataga aataatccca tgcatactat      6960
     cagaccacca cgggctaaac tggtcttcaa taacaataag ggaagaacgc ccacatatac      7020
     atggaagttg aacaatgctc tactcaatga taacctggtc aaggaagaaa taaagaaaga      7080
     aattaaagac ttcttagaat ttaatgaaaa tgaaggtaca acatacccaa acttatggga      7140
     cacaatgaaa gctgtgctaa gaggaaaact catagctctg agtgcctgca gaaagaaaca      7200
     ggagagagca tatgacagca gcttgacagc atacctaaaa gctctagaaa aagagaagca      7260
     aatacaccca ggaggagtag aagacaggaa ataatcaaac acagagctga aatcagccaa      7320
     gtagaaacaa aaaggacctt ttaaagaatc aacagaacca aaagttggct ctttgagaaa      7380
     accaacaaga taaataaccc cttagccaga ctaccgagag gacacagaga gtgtttccaa      7440
     attaacaaaa tcagaaagga aaagggagac ataattacag aatcagagga aattcaaaaa      7500
     atcatcagat cttactataa aagcctatat tcaacgaaac ttgaaaatct gcaggaaatg      7560
     gacaatttcg tagacagata ccacgtactg aagttaaatc aggaacagat aaaccagtta      7620
     aacaacccca taactcctac ggacatacaa ccagtcatta gagcggcctc cccccaaaaa      7680
     gagcccagcc acagatgggg gttaggggcc gaactctatt aagagctggc gtggaagacc      7740
     ctgcatacca ataattattt aaccgctatt tcccccaaaa cccgcaaacc ccatgcgagg      7800
     caccacccgg aattcccgtc ctattgaagg ccaccactta cctgcttaac ccctgaaacc      7860
     cccatggaac gacctcctca cacgaaaagc agaactttcc gcaccgaatc tgtccctcta      7920
     tggaatacac gagacgggaa taagtccacc cacaaanatc tcctctgcaa aacccaatca      7980
     ccgcggagca ccaacggac                                                   7999
//