LOCUS       AC098507              222894 bp    DNA     linear   HTG 02-OCT-2002
DEFINITION  Rattus norvegicus clone CH230-64E22, *** SEQUENCING IN PROGRESS
            ***, 4 unordered pieces.
ACCESSION   AC098507
VERSION     AC098507.4  GI:23101398
KEYWORDS    HTG; HTGS_PHASE1; HTGS_DRAFT; HTGS_ENRICHED.
SOURCE      Norway rat.
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae;
            Rattus.
REFERENCE   1  (bases 1 to 222894)
  AUTHORS   Muzny,D.Marie., Metzker,M.Lee., Abramzon,S., Adams,C., Alder,J.,
            Allen,C., Allen,H., Alsbrooks,S., Amin,A., Anguiano,D.,
            Anyalebechi,V., Aoyagi,A., Ayodeji,M., Baca,E., Baden,H.,
            Baldwin,D., Bandaranaike,D., Barber,M., Barnstead,M., Benahmed,F.,
            Biswalo,K., Blair,J., Blankenburg,K., Blyth,P., Brown,M.,
            Bryant,N., Buhay,C., Burch,P., Burrell,K., Calderon,E.,
            Cardenas,V., Carter,K., Cavazos,I., Ceasar,H., Center,A.,
            Chacko,J., Chavez,D., Chen,G., Chen,R., Chen,Y., Chen,Z., Chu,J.,
            Cleveland,C., Cockrell,R., Cox,C., Coyle,M., Cree,A., D'Souza,L.,
            Davila,M.L., Davis,C., Davy-Carroll,L., De Anda,C., Dederich,D.,
            Delgado,O., Denson,S., Deramo,C., Ding,Y., Dinh,H., Divya,K.,
            Draper,H., Dugan-Rocha,S., Dunn,A., Durbin,K., Duval,B., Eaves,K.,
            Egan,A., Escotto,M., Eugene,C., Evans,C.A., Falls,T., Fan,G.,
            Fernandez,S., Finley,M., Flagg,N., Forbes,L., Foster,M., Foster,P.,
            Fraser,C.M., Gabisi,A., Ganta,R., Garcia,A., Garner,T., Garza,M.,
            Gebregeorgis,E., Geer,K., Gill,R., Grady,M., Guerra,W., Guevara,W.,
            Gunaratne,P., Haaland,W., Hamil,C., Hamilton,C., Hamilton,K.,
            Harvey,Y., Havlak,P., Hawes,A., Henderson,N., Hernandez,J.,
            Hernandez,R., Hines,S., Hladun,S.L., Hodgson,A., Hogues,M.,
            Hollins,B., Howells,S., Hulyk,S., Hume,J., Idlebird,D., Jackson,A.,
            Jackson,L., Jacob,L., Jiang,H., Johnson,B., Johnson,R., Jolivet,A.,
            Karpathy,S., Kelly,S., Kelly,S., Khan,Z., King,L., Kovar,C.,
            Kowis,C., Kraft,C.L., Lebow,H., Levan,J., Lewis,L., Li,Z., Liu,J.,
            Liu,J., Liu,W., Liu,Y., London,P., Longacre,S., Lopez,J.,
            Lorensuhewa,L., Loulseged,H., Lozado,R.J., Lu,X., Ma,J.,
            Maheshwari,M., Mahindartne,M., Mahmoud,M., Malloy,K., Mangum,A.,
            Mangum,B., Mapua,P., Martin,K., Martin,R., Martinez,E.,
            Mawhiney,S., McLeod,M.P., McNeill,T.Z., Meenen,E.,
            Milosavljevic,A., Miner,G., Minja,E., Montemayor,J., Moore,S.,
            Morgan,M., Morris,K., Morris,S., Munidasa,M., Murphy,M., Nair,L.,
            Nankervis,C., Neal,D., Newton,N., Nguyen,N., Norris,S.,
            Nwaokelemeh,O., Okwuonu,G., Olarnpunsagoon,A., Pal,S., Parks,K.,
            Pasternak,S., Paul,H., Perez,A., Perez,L., Pfannkoch,C.,
            Plopper,F., Poindexter,A., Popovic,D., Primus,E., Pu,L.-L.,
            Puazo,M., Quiroz,J., Rachlin,E., Reeves,K., Regier,M.A., Reigh,R.,
            Reilly,B., Reilly,M., Ren,Y., Reuter,M., Richards,S., Riggs,F.,
            Rives,C., Rodkey,T., Rojas,A., Rose,M., Rose,R., Ruiz,S.J.,
            Sanders,W., Savery,G., Scherer,S., Scott,G., Shatsman,S., Shen,H.,
            Shetty,J., Shvartsbeyn,A., Sisson,I., Sitter,C.D., Smajs,D.,
            Sneed,A., Sodergren,E., Song,X.-Z., Sorelle,R., Sosa,J.,
            Steimle,M., Strong,R., Sutton,A., Svatek,A., Tabor,P., Taylor,C.,
            Taylor,T., Thomas,N., Thomas,S., Tingey,A., Trejos,Z., Usmani,K.,
            Valas,R., Vera,V., Villasana,D., Waldron,L., Walker,B., Wang,J.,
            Wang,Q., Wang,S., Warren,J., Warren,R., Wei,X., White,F.,
            Williams,G., Willson,R., Wleczyk,R., Wooden,H., Worley,K.,
            Wright,D., Wright,R., Wu,J., Yakub,S., Yen,J., Yoon,L., Yoon,V.,
            Yu,F., Zhang,J., Zhou,J., Zhou,X., Zhao,S., Dunn,D., von
            Niederhausern,A., Weiss,R., Smith,D.R., Holt,R.A., Smith,H.O.,
            Weinstock,G. and Gibbs,R.A.
  TITLE     Direct Submission
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 222894)
  AUTHORS   Worley,K.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2001) Human Genome Sequencing Center, Department
            of Molecular and Human Genetics, Baylor College of Medicine, One
            Baylor Plaza, Houston, TX 77030, USA
REFERENCE   3  (bases 1 to 222894)
  AUTHORS   Rat Genome Sequencing Consortium.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2002) Human Genome Sequencing Center, Department
            of Molecular and Human Genetics, Baylor College of Medicine, One
            Baylor Plaza, Houston, TX 77030, USA
COMMENT     On Sep 18, 2002 this sequence version replaced gi:21729583.
            The sequence in this assembly is a combination of BAC based reads
            and whole genome shotgun sequening reads assembled using Atlas
            (http://www.hgsc.bcm.tmc.edu/projects/rat/).  As a result, the
            sequence may extend beyond the ends of the clone and there may be
            contigs that consist entirely of whole genome shotgun sequence
            reads.  Both end sequences and whole genome shotgun sequence only
            contigs will be indicated in the feature table.
            -------------- Genome Center
                Center: Baylor College of Medicine
                Center code: BCM
                Web site: http://www.hgsc.bcm.tmc.edu/
                Contact: hgsc-help@bcm.tmc.edu
            -------------- Project Information
                Center project name: GHFK
                Center clone name: CH230-64E22
            -------------- Summary Statistics
                Assembly program: Phrap; version 0.990329
                Consensus quality: 188948 bases at least Q40
                Consensus quality: 191888 bases at least Q30
                Consensus quality: 194315 bases at least Q20
                Estimated insert size: 211140; sum-of-contigs estimation
                Quality coverage: 4x in Q20 bases; sum-of-contigs estimation
            --------------
            * NOTE: Estimated insert size may differ from sequence length
            *   (see http://www.hgsc.bcm.tmc.edu/docs/Genbank_draft_data.html).
            * NOTE: This is a 'working draft' sequence. It currently
            * consists of 4 contigs. The true order of the pieces
            * is not known and their order in this sequence record is
            * arbitrary. Gaps between the contigs are represented as
            * runs of N, but the exact sizes of the gaps are unknown.
            * This record will be updated with the finished sequence
            * as soon as it is available and the accession number will
            * be preserved.
            *        1    39386: contig of 39386 bp in length
            *    39387    39486: gap of unknown length
            *    39487   219174: contig of 179688 bp in length
            *   219175   219274: gap of unknown length
            *   219275   221001: contig of 1727 bp in length
            *   221002   221101: gap of unknown length
            *   221102   222894: contig of 1793 bp in length.
FEATURES             Location/Qualifiers
     source          1..222894
                     /organism="Rattus norvegicus"
                     /db_xref="taxon:10116"
                     /clone="CH230-64E22"
     misc_feature    39487..40619
                     /note="wgs_contig"
BASE COUNT    46937 a  50733 c  50888 g  47593 t  26743 others
//