LOCUS       MAV250018               3146 bp    DNA     linear   BCT 07-JUL-2002
DEFINITION  Mycobacterium avium subsp. paratuberculosis insertion sequence
            IS900, Locus 4.
ACCESSION   AJ250018
VERSION     AJ250018.1  GI:8919137
KEYWORDS    cytochrome P450; insertion element; insertion sequence IS900; nirA
            gene; nitrate reductase; p43 gene; P450 gene; transposase.
SOURCE      Mycobacterium avium subsp. paratuberculosis.
  ORGANISM  Mycobacterium avium subsp. paratuberculosis
            Bacteria; Firmicutes; Actinobacteria; Actinobacteridae;
            Actinomycetales; Corynebacterineae; Mycobacteriaceae;
            Mycobacterium; Mycobacterium avium complex (MAC).
REFERENCE   1
  AUTHORS   Bull,T.J., Hermon-Taylor,J., Pavlik,I., El-Zaatari,F. and Tizard,M.
  TITLE     Characterization of IS900 loci in Mycobacterium avium subsp.
            paratuberculosis and development of multiplex PCR typing
  JOURNAL   Microbiology 146 (Pt 9), 2185-2197 (2000)
  MEDLINE   20431891
REFERENCE   2  (bases 1 to 3146)
  AUTHORS   Bull,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-1999) Bull T.J., Surgery, St.George's Hospital
            Medical School, London, SW17 ORE, UNITED KINGDOM
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Mycobacterium avium subsp. paratuberculosis"
                     /sub_species="paratuberculosis"
                     /db_xref="taxon:1770"
     gene            complement(314..910)
                     /gene="nirA"
     CDS             complement(314..>910)
                     /gene="nirA"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase"
                     /protein_id="CAB96057.1"
                     /db_xref="GI:8919138"
                     /db_xref="SPTREMBL:Q9K541"
                     /translation="TPHDHRTSRQDPQRGSVGAGRSRTAQRHREDQAGRRAAEQIGER
                     IINVYAKQGFDSIDKSDLRGRFRWMGLYTQREQGYDGSWTGDDNTDKIEAKYFMMRVR
                     SDGKAMSAHTMRTLGQISTEFARDTADISDRENLQLHWIRIEDVPEIWRRLESVGLQT
                     TEACADCPRGIHGSPLAGTRSTRCSIRRPRSRRSSVAP"
     repeat_region   911..2361
                     /insertion_seq="IS900"
     gene            1125..2345
                     /gene="p43"
     CDS             1125..2345
                     /gene="p43"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="CAB96058.1"
                     /db_xref="GI:8919139"
                     /db_xref="SPTREMBL:Q9K2H2"
                     /translation="MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDE
                     AALLELIAAVTTLADGGEVTWAIDLNAGGAALLIALLIAAGQRLLYIPGRTVHHAAGS
                     YRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAIEP
                     NARPAAGILSALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNAD
                     TVAATALQAANAQHSIVPGQQLAATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHA
                     EIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVPRDSGRISGNLKRPR
                     RYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLR
                     DHAVYHPATTTAAA"
     gene            complement(2362..2376)
                     /gene="nirA"
     CDS             complement(<2362..2376)
                     /gene="nirA"
                     /note="ORF interrupted by IS900 insertion"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase"
                     /protein_id="CAB96059.1"
                     /db_xref="GI:8919140"
                     /db_xref="REMTREMBL:CAB96059"
                     /translation="MFAKE"
     gene            complement(2795..3145)
                     /gene="p450"
     CDS             complement(2795..>3145)
                     /gene="p450"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cytochrome p450"
                     /protein_id="CAB96060.1"
                     /db_xref="GI:8919141"
                     /db_xref="SPTREMBL:Q9K540"
                     /translation="GAAARQSRPVGPRRSRRSCDRQPGPDDRAHAPPATSTSAPAMVG
                     LVPRRARNRDPKVFSDPTTFDVTRPNAREHLAFASGIHACLGAALARIEGATCARSFE
                     NFPDRSSRARNGGR"
BASE COUNT      485 a   1018 c   1075 g    568 t
ORIGIN      
        1 tttctatgcc ccagtccttg accaggaact tcagccgggc cttgcgcgca gccgcggtag
       61 ccgtagtcgc ggaacagctg ggtgacggct tcccacacgt cgggcacctc gtccagcgga
      121 acccacacgc tgagccgctg ggccagcatc gggttggtgg acaggccgcc gcccacccac
      181 aggtccaggc cgggtccgtg ctcggggtgc tcgacgccga cgaacgcgac gtcgtgggtc
      241 tcgtgcgaga cgtcctgcag gcccgagacc gcggttttgt acttgcgcgg caggttggcg
      301 tattcggggt tgttcaggga gcgacggacg atctcctcga tcgcgggcga cggatcgagc
      361 acctcgtcga gcgagtgccg gccagcggcg agccgtggat gccgcgcggg cagtccgcgc
      421 aggcctcggt ggtctgcagc ccgacggact cgagccgtcg ccagatctcg ggcacgtcct
      481 cgatgcgaat ccagtgcagc tgcaggtttt cccggtcgct gatatcggcg gtgtcgcggg
      541 cgaattcggt ggagatctgg ccgagcgtgc gcatggtgtg cgccgacatc gccttgccgt
      601 cggagcggac ccgcatcatg aagtacttgg cttcgatctt gtcggtgttg tcgtcaccgg
      661 tccagctgcc gtcgtagccc tgctcgcgtt gggtgtacag gcccatccac cggaagcggc
      721 cgcgcaggtc ggacttgtcg atgctgtcga aaccctgctt ggcgtagacg ttgatgatgc
      781 gctcgccgat ctgttcagcg gcccgtcggc cagcttgatc ttctcggtgt cgttgagcgg
      841 ttcgcgatct cccagcgccc actgaccctc gttgcgggtc ttgacgggac gtgcggtggt
      901 catgtggtgt tccttacctt tcttgaaggg tgttcggggc cgtcgcttag gcttcgaatt
      961 gcccagggac gtcgggtatg gctttcatgt ggttgctgtg ttggatggcc gaaggagatt
     1021 ggccgcccgc ggtcccgcga cgactcgacc gctaattgag agatgcgatt ggatcgctgt
     1081 gtaaggacac gtcggcgtgg tcgtctgctg ggttgatctg gacaatgacg gttacggagg
     1141 tggttgtggc acaacctgtc tgggcgggcg tggacgccgg taaggccgac cattactgca
     1201 tggttattaa cgacgacgcg cagcgattgc tctcgcagcg ggtggccaac gacgaggccg
     1261 cgctgctgga gttgattgcg gcggtgacga cgttggccga tggaggcgag gtcacgtggg
     1321 cgatcgacct caacgccggc ggcgccgcgt tgctgatcgc cttgctcatc gctgccgggc
     1381 agcggctgct ttatattccc gggcgcacgg tccatcacgc cgcgggtagt taccgcggcg
     1441 aaggcaagac cgacgccaaa gacgctgcga tcatcgccga tcaggcccgg atgcgccacg
     1501 acttgcagcc tctgcgcgcc ggcgatgaca tcgcagtcga gctgcgcatc ctgaccagcc
     1561 gacgttccga tctggtggct gatcggaccc gggcgatcga accgaatgcg cgcccagctg
     1621 ctggaatact ttcggcgctg gaacgcgcct tcgactacaa caagagccgt gccgcgctga
     1681 tcctgcttac tggctaccaa actcccgacg cgctgcgcag cgccggtggc gctcgagtag
     1741 ccgcgttctt gcgtaaacgc aaggcccgca acgccgatac cgtcgcagcc accgcgctgc
     1801 aggccgctaa cgcccaacac agcatcgtgc ccggccaaca actggcggcc actgtggtgg
     1861 cccgcctggc caaggaggtg atggccctcg acaccgaaat cggcgacacc gacgcgatga
     1921 tcgaggagcg atttcgccgc caccgccacg ccgaaatcat cctgagcatg cccggattcg
     1981 gcgtcatcct gggcgctgag ttcctcgccg ccaccggcgg ggacatggcc gcattcgcct
     2041 ccgccgaccg cctcgccggc gtcgccggcc tggcgccggt accacgagat tccggccgca
     2101 tcagcggaaa cctcaaacgc ccccgacgct acgaccggcg cctgctgcgc gcctgctacc
     2161 tgtcggcctt ggtcagcatc cgcaccgacc cctcctcgcg cacctactac gaccgaaaac
     2221 gcaccgaagg aaaacgccac acccaagccg tcctcgccct ggcccgccgc cgcctcaacg
     2281 tcctgtgggc catgctgcgc gaccacgctg tctaccaccc cgcaaccact accgcggcgg
     2341 cttgacaacg tcattgagaa tctccttcgc gaacattccc cggtgtgcga cgcaccgggg
     2401 tggtgttcct gacggcggct cagatcggcc tgctacgggg ccgggatggg ctgtcggccg
     2461 cggcatcgcg atgatgttgg ggctttaggc acccgcaagt tcgtcgttgg acccacgggt
     2521 cgcgattccc atagtgcact acttgcggcc gcgtcagtag aggtcgcatg ttgtgagggc
     2581 acaaccggac gttgtgtgcg ccgcttcacg atgggtgacg gcgatcactt tgcgggccag
     2641 gcgaattgcc gggccggtcg ctgccgtgag gttggcaatt ccggcctgat tggcaacctt
     2701 ggtcaggccg ggcgtcagac cgaatcccgt ggcggaacgt ccgttctgcg gccgccgagt
     2761 tgggccggca gccgggtgta tccgtgcaag ttgatcagcg accgccgttg cgggcgcgtg
     2821 acgaccgatc ggggaagttc tcgaaggagc gcgcgcacgt ggcgccctcg atgcgggcca
     2881 gggcggcgcc caggcaggcg tggatgccgg aggcgaatgc caggtgctcg cgcgcattgg
     2941 gtcgggtgac gtcgaaagtg gttgggtcgc tgaacacttt ggggtcgcgg ttccgggcgc
     3001 gccgaggaac gagcccgacc atcgccggcg ccgatgtcga cgtcgcaggc ggggcgtgcg
     3061 cgcggtcatc tggaccgggc tggcgatcgc aggatctcct cgaccggcga gggccgacag
     3121 gtcgggattg tcgtgcagca gcgcca
//