LOCUS       AC116785              132912 bp    DNA     linear   HTG 08-JUL-2002
DEFINITION  Mus musculus clone RP24-146B1, WORKING DRAFT SEQUENCE, 10 ordered
            pieces.
ACCESSION   AC116785
VERSION     AC116785.3  GI:21703640
KEYWORDS    HTG; HTGS_PHASE2; HTGS_DRAFT; HTGS_FULLTOP.
SOURCE      house mouse.
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
REFERENCE   1  (bases 1 to 132912)
  AUTHORS   Birren,B.
  TITLE     Mus musculus, clone RP24-146B1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 132912)
  AUTHORS   Birren,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2002) Whitehead Institute/MIT Center for Genome
            Research, 320 Charles Street, Cambridge, MA 02141, USA
REFERENCE   3  (bases 1 to 132912)
  AUTHORS   Birren,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2002) Whitehead Institute/MIT Center for Genome
            Research, 320 Charles Street, Cambridge, MA 02141, USA
COMMENT     On Jul 8, 2002 this sequence version replaced gi:21700645.
            All repeats were identified using RepeatMasker:
            Smit, A.F.A. & Green, P. (1996-1997)
            http://ftp.genome.washington.edu/RM/RepeatMasker.html
            -------------- Genome Center
                Center: Whitehead Institute/ MIT Center for Genome Research
                Center code: WIBR
                Web site: http://www-seq.wi.mit.edu
                Contact: sequence_submissions@genome.wi.mit.edu
            -------------- Project Information
                Center project name: L25104
                Center clone name: 146_B_1
            -------------- Summary Statistics
                Sequencing vector: Plasmid; n/a; 100% of reads
                Chemistry: Dye-terminator Big Dye; 100% of reads
                Assembly program: Phrap; version 0.960731
                Consensus quality: 130058 bases at least Q40
                Consensus quality: 131186 bases at least Q30
                Consensus quality: 131595 bases at least Q20
                Insert size: 142000; agarose-fp
                Insert size: 132012; sum-of-contigs
                Quality coverage: 6.9 in Q20 bases; agarose-fp
                Quality coverage: 7.5 in Q20 bases; sum-of-contigs
            --------------.
            * NOTE: This is a 'working draft' sequence. It currently
            * consists of 10 contigs. Gaps between the contigs
            * are represented as runs of N. The order of the pieces
            * is believed to be correct as given, however the sizes
            * of the gaps between them are based on estimates that have
            * provided by the submittor.
            * This sequence will be replaced
            * by the finished sequence as soon as it is available and
            * the accession number will be preserved.
            *        1     1178: contig of 1178 bp in length
            *     1179 1278: gap of      100 bp
            *     1279     2835: contig of 1557 bp in length
            *     2836 2935: gap of      100 bp
            *     2936     5385: contig of 2450 bp in length
            *     5386 5485: gap of      100 bp
            *     5486     8192: contig of 2707 bp in length
            *     8193 8292: gap of      100 bp
            *     8293    10488: contig of 2196 bp in length
            *    10489 10588: gap of      100 bp
            *    10589    12801: contig of 2213 bp in length
            *    12802 12901: gap of      100 bp
            *    12902    18716: contig of 5815 bp in length
            *    18717 18816: gap of      100 bp
            *    18817    34793: contig of 15977 bp in length
            *    34794 34893: gap of      100 bp
            *    34894    51004: contig of 16111 bp in length
            *    51005 51104: gap of      100 bp
            *    51105   132912: contig of 81808 bp in length.
FEATURES             Location/Qualifiers
     source          1..132912
                     /organism="Mus musculus"
                     /db_xref="taxon:10090"
                     /clone="RP24-146B1"
                     /clone_lib="RPCI-24 Male Mouse BAC"
     misc_feature    1..1178
                     /note="assembly_fragment"
     misc_feature    1279..2835
                     /note="assembly_fragment"
     misc_feature    2936..5385
                     /note="assembly_fragment"
     misc_feature    5486..8192
                     /note="assembly_fragment"
     misc_feature    8293..10488
                     /note="assembly_fragment"
     misc_feature    10589..12801
                     /note="assembly_fragment"
     misc_feature    12902..18716
                     /note="assembly_fragment"
     misc_feature    18817..34793
                     /note="assembly_fragment"
     misc_feature    34894..51004
                     /note="assembly_fragment"
     misc_feature    51105..132912
                     /note="assembly_fragment"
BASE COUNT    43599 a  24512 c  23668 g  40195 t    938 others
ORIGIN      
        1 mhkkiciiga gaaglvsakh aikqgyqvdi feqtdqvggt wvysektgch sslykvmktn
       61 lpkeamlfqd epfrdelpsf mshehvleyl nefskdfpiq fsstvnevkr endlwkvlie
      121 snsetitrfy dvvfvcnghf feplnpyqns yfkgklihsh dyrraehytg knvvivgagp
      181 sgiditlqia qtanhvtlis kkatypvlpe svqqmatnvk svdehgvvtd egdhvpadvi
      241 ivctgyvfkf pfldssliql kyndrmvspl yehlchvdyp ttlffiglpl gtitfplfev
      301 qvkyalslia gkgklpsddv eirnfedarl qgllnpasfh viieeqweym kklakmggfe
      361 ewnymetikk lygyimterk knvigykmvn felttdssdf klltirvdfn ddvawiirfa
      421 ypi
//