Instructor
2023: MH5201 "Advance Investigation in Linear Algebra II"
2023: MH4571 "Data Applications in Natural Sciences"
2022: MH5200 "Advanced Investigations in Linear Algebra I"
2022: MH1100 "Calculus I"
(shared with Ping Tong)
2022: MH5201 "Advance Investigation in Linear Algebra II"
2022: MH4571 "Data Applications in Natural Sciences"
2021: MH5200 "Advanced Investigations in Linear Algebra I"
2021: MH1100 "Calculus I"
(shared with Ping Tong)
2021: MH5201 "Advance Investigation in Linear Algebra II"
2021: MH4571 "Data Applications in Natural Sciences"
2020: MH9200 "Advanced Investigations in Linear Algebra I"
2020: MH1100 "Calculus I"
(shared with Ping Tong)
2019: MH9200
"Advance Investigation in Linear Algebra I"
2019: MH1100 "Calculus I"
(shared with Ping Tong)
2019: MH9201
"Advance Investigation in Linear Algebra II"
2018: MH9100
"Advance Investigation of Calculus I"
2018: MH1100 "Calculus I"
(shared with Ping Tong)
2018: MH9201
"Advance Investigation in Linear Algebra II"
2017: MH9100
"Advance Investigation of Calculus I"
2017: MH1100 "Calculus I"
Office Hour: Friday 14:00-17:00(shared with Ping Tong)
2017: BG7005 "Advanced Mathematics for Bioengineering" (shared with Ran Ni)
2017: MH4600 "Algebraic Topology"
(Syllabus)
2016: MH9200
"Advance Investigation in Linear Algebra I"
(Syllabus; NTU learn)
2015: Math
132 (Section 016 and Section 020) (Syllabus;Schedule;
Classpage)
Office Hour: Friday 14:00-17:00
2014: Math
132 (Section 014 and Section 033) (Syllabus;Schedule; Attendance)
Office
Hour: Friday 13:30-14:30,16:00-17:00
2013: Math 132 (Section 016 and Section
024) (Syllabus; Schedule; WeBWork)
Office
Hour: Friday 14:00-17:00
Useful links for computating
1.
Fortran codes
John Burkardt: http://people.sc.fsu.edu/~jburkardt/
Numerical Recipes:
http://www.aip.de/groups/soe/local/numres/
Numerical methods: http://tonic.physics.sunysb.edu/docs/num_meth.html
Jon Squire: http://www.csee.umbc.edu/~squire/
http://www.csee.umbc.edu/~squire/cs411_down.shtml#CS455
others: http://www.erogol.com/large-set-machine-learning-resources-beginners-mavens/
http://www.fortran.gantep.edu.tr/compiling-g95-basic-guide.html
http://math.berkeley.edu/~strain/Codes/index.html
ftp://ftp.eos.ncsu.edu/pub/math/zhilin/Packages/
2.
Molecular dynamics
PDB:http://www.rcsb.org/pdb/home/home.do
EMDB:http://www.emdatabank.org/
VMD: http://www.ks.uiuc.edu/Research/vmd/
NMAD: http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-unix-html/index.html
https://research.cchmc.org/wiki/index.php/NAMD_Tutorial#Restarting_.28continuing.29_simulation
AMBER: http://ambermd.org/tutorials/
Chimera: https://www.cgl.ucsf.edu/chimera/
http://www.cgl.ucsf.edu/chimera/videodoc/videodoc.html
SMD: http://www.ks.uiuc.edu/Research/smd_imd/titin/
http://www.ks.uiuc.edu/Research/mechanicals/
MMTSB: http://blue11.bch.msu.edu/mmtsb/Main_Page
3.
Normal mode analysis
ANM: http://ignmtest.ccbb.pitt.edu/cgi-bin/anm/anm1.cgi
GNM:http://en.wikipedia.org/wiki/Gaussian_network_model
GNM and ANM Code: http://www.csb.pitt.edu/resources/gnm/
http://ignmtest.ccbb.pitt.edu/anmdocs/source.html
ProDy:http://prody.csb.pitt.edu/
NMWiz:http://prody.csb.pitt.edu/nmwiz/ http://www.ccbb.pitt.edu/Faculty/bahar/index.php
4.
Persistent homology
Perseus: http://www.sas.upenn.edu/~vnanda/perseus/index.html
Javaplex: http://code.google.com/p/javaplex/
http://javaplex.github.io/javaplex/
Dionysus: http://www.mrzv.org/software/dionysus/
Comptop: http://comptop.stanford.edu/
fullerene: http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html
Lectures and useful links:
http://web.cse.ohio-state.edu/~tamaldey/course/CTDA/CTDA.html
http://pub.ist.ac.at/~edels/
http://www.mrzv.org/
http://www.math.upenn.edu/~ghrist/index.html
http://www.math.duke.edu/~hadams/research/
http://www.cs.dartmouth.edu/~afra/papers.html
5.Linux
related
Bash script: http://linuxconfig.org/bash-scripting-tutorial
putty and xming: http://www.siue.edu/~dbock/cmis565/PuTTYColorSettings.htm
http://www.geo.mtu.edu/geoschem/docs/putty_install.html
python: https://docs.python.org/2/index.html
Image converter: http://image.online-convert.com/
MATLAB Codes: http://m2matlabdb.ma.tum.de/index.jsp:
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