ID | YEAR | AUTHORS | TITLE | ACCEPT. RATE |
---|---|---|---|---|
37 | Aug 2022 | Huey Eng Chua, Lisa Tucker-Kellogg, Sourav S Bhowmick |
ArcheGEO: Towards Improving Relevance of Gene Expression Omnibus Search Results In the Proceedings of 13th ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB 2022) ACM Press, Chicago, USA |
- |
36 | Jan 2018 | Huey Eng Chua, Sourav S Bhowmick, Jie Zheng |
TROVE: A User-friendly Tool for Visualizing and Analyzing Cancer Hallmarks in Signaling Networks Bioinformatics, 34(2), Oxford Univ Press. |
- |
35 | Oct 2017 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg |
Methods, Vol 129, Elsevier Science (Invited Paper) |
- |
34 | Aug 2017 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg |
TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking In the Proceedings of 8th ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB 2017) ACM Press, Boston, USA |
- |
33 | May 2017 | Sourav S Bhowmick, Boon-Siew Seah | Summarizing Biological Networks
Springer Verlag, ISBN 978-3-319-54620-9, Pages: 146. |
- |
32 | Dec 2016 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg, and C Forbes Dewey, Jr |
TENET: A Machine Learning-based System for Target Characterization in Signaling Networks In the Proceedings of 16th IEEE Conference on Data Mining (IEEE ICDM 2016) IEEE CS, Barcelona, Spain (Demo) |
Acceptance Rate: - |
31 | Dec 2016 | Boon Siew Seah, Sourav S Bhowmick, Huey Eng Chua, Mengxuan Chen, and C Forbes Dewey, Jr |
FacetsViewer: A Tool for Multi-faceted Decomposition of Complex Networks In the Proceedings of 16th IEEE Conference on Data Mining (IEEE ICDM 2016) IEEE CS, Barcelona, Spain (Demo) |
Acceptance Rate: - |
30 | Oct 2016 | Huey Eng Chua, Sourav S Bhowmick, Zheng Jie, Lisa Tucker-Kellogg |
TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks In the Proceedings of 7th ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB 2016) ACM Press, Seattle, USA |
Acceptance Rate: 47/112 |
29 | Oct 2016 | Shital K Mishra, Sourav S Bhowmick, Huey Eng Chua, Zheng Jie |
Predictive Modeling of Drug Effects on Signaling Pathways in Diverse Cancer Cell Lines In the Proceedings of 7th ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB 2016) ACM Press, Seattle, USA |
Acceptance Rate: 47/112 |
28 | March 2016 | Sourav S Bhowmick, Boon Siew Seah |
Clustering and Summarizing Protein-Protein Interaction Networks: A Survey IEEE Transactions on Data and Knowledge Engineering (TKDE), 28(3), IEEE CS |
- |
27 | Oct 2015 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg, C F Dewey, Jr |
TENET: Topological Feature-based Target Characterization in Signaling Networks Bioinformatics, 31(20), Oxford Univ Press. |
- |
26 | January 2015 | Shital K Mishra, Sourav S Bhowmick, Huey Eng Chua, Fan Zhang, Jie Zheng |
BMC Systems Biology, 9:S4, Biomed Central. |
- |
25 | Oct 2014 | Boon-Siew Seah, Sourav S Bhowmick, C. Forbes Dewey, Jr. |
DiffNet: Automatic Differential Functional Summarization of dE-MAP Networks Methods (IF 4.15), 69, Elsevier Science (Invited Paper) |
- |
24 | Sep 2014 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg |
One Feature Doesn’t Fit All: Characterizing Topological Features of Targets in Signaling Networks In the Proceedings of 5th ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB 2014) ACM Press, Newport Beach, California, USA |
Acceptance Rate: - |
23 | Sep 2014 | Boon-Siew Seah, Sourav S Bhowmick, C. Forbes Dewey, Jr. |
Bioinformatics (IF 5.32), 30(18), Oxford Univ Press |
- |
22 | Jan 2014 | Sourav S Bhowmick, Huey Eng Chua, Jie Zheng |
INGOT: Towards Network-driven In Silico Combination Therapy In the Proceedings of 1st International Conference on Big Data and Smart Computing (BigComp 2014) IEEE CS, Bangkok, Thailand (Invited Paper) |
|
21 | Nov 2012 | Boon-Siew Seah, Sourav S Bhowmick, C. Forbes Dewey, Jr. |
FACETS: Multi-faceted Functional Decomposition of Protein Interaction Networks Bioinformatics (IF 5.47), 28(20), Oxford Univ Press |
- |
20 | Oct 2012 | Huey Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg, C. F. Dewey, Jr |
In the Proceedings of 3rd ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB 2012) ACM Press, Orlando, Florida, USA |
Acceptance Rate: 20.7% |
19 | Sept 2012 | L. Venkatraman, Ser-Mien Chia, B. C. Narmada, Jacob K White, Sourav S Bhowmick, C. Forbes Dewey, Jr., Peter So, Lisa Tucker-Kellogg, Hanry Yu |
Plasmin Triggers a Switch-like Decrease in Thrombospondin-Dependent Activation of TGF-beta1 Biophysical Journal, 103(5), Elsevier Science (IF 4.22) |
- |
18 | Mar 2012 | Boon-Siew Seah, Sourav S Bhowmick, C F Dewey,Jr, Hanry Yu |
FUSE: A Profit Maximization Approach for Functional Summarization of Biological Networks BMC Bioinformatics, 13(S3), Biomed Central (IF 3.03) (Special Issue on Best Papers of ACM BCB 2011) |
|
17 | Jan 2012 | Huey-Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg, Qing Zhao, C F Dewey, Hanry Yu |
In Silico Identification of Endo16 Regulators in the Sea Urchin Endomesoderm Gene Regulatory Network In the Proceedings of 2nd ACM SIGHIT International Health Informatics Symposium ACM Press, Miami, Florida, USA |
Acceptance Rate: 25.4% |
16 | Jan 2012 | Huey-Eng Chua, Sourav S Bhowmick, Lisa Tucker-Kellogg, Yingqi Wang, C F Dewey, Hanry Yu |
PANI: An Interactive Data-Driven Tool for Target Prioritization in Signaling Networks In the Proceedings of 2nd ACM SIGHIT International Health Informatics Symposium ACM Press, Miami, Florida, USA (Demo) |
|
15 | Jan 2012 | Boon-Siew Seah, Sourav S Bhowmick, C F Dewey, Hanry Yu |
FUSE: A System for Data-Driven Multi-Level Functional Summarization of Protein Interaction Networks In the Proceedings of 2nd ACM SIGHIT International Health Informatics Symposium ACM Press, Miami, Florida, USA (Demo) |
|
14 | 2011 | L Venkatraman, Huipeng Li, C. F. Dewey, J. K. White, Sourav S Bhowmick, Hanry Yu, Lisa Tucker-Kellogg |
The Steady States and Dynamics of Urokinase-mediated Plasmin Activation In Silico and In Vitro Biophysical Journal, 101(8), Elsevier Science (IF 4.2) |
- |
13 | Aug 2011 | Boon-Siew Seah, Sourav S Bhowmick, C F Dewey, Jr, Hanry Yu |
FUSE: Towards Multi-Level Functional Summarization of Protein Interaction Networks In the Proceedings of 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB 2011) ACM Press, Chicago, USA Best Paper Award |
Acceptance Rate: 19% |
12 | Aug 2011 | Huey-Eng Chua, Sourav S Bhowmick, Qing Zhao, L Tucker-Kellogg, C F Dewey, Jr, Hanry Yu |
PANI: A Novel Algorithm for Fast Discovery of Putative Target Nodes in Signaling Networks In the Proceedings of 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB 2011) ACM Press, Chicago, USA (Short) |
|
11 |
March 2010 |
W.-X. Zhang, Lisa Tucker-Kellogg, B.C. Narmada, L. Venkatraman, S. Chang, Y. Lu, Nancy Tan, J. White, C. F. Dewey, S S Bhowmick, Peter So, S Shen, Hanry Yu |
Cell Delivery Therapeutics for Liver Regeneration
Advanced Drug Delivery Reviews (ADDR) |
- |
10 | Jan 2010 | L Venkatraman, Hanry Yu, Sourav S Bhowmick, C F Dewey, Jr, L Tucker-Kellogg |
The Steady States and Dynamics of Urokinase Mediated Plasmin Activation In the Proceedings of 15th Pacific Symposium of Biocomputing (PSB 2010) Hawai, USA. |
|
9 | Apr 2010 | Yang Song, Sourav S Bhowmick |
BIDEL: An XML-based System for Effective Fast Change Detection of Genomic and Proteomic Data |
|
8 | Apr 2007 | Y Song, S S Bhowmick, C F Dewey |
BioDIFF: An Effective Fast Change Detection Algorithm for Biological Annotations |
Acceptance rate 18.7% |
7 | Feb 2005 | Yang Song, S S Bhowmick, S K Madria |
Bio2X: A Rule-based Approach to Semi-automatic Transformation of Semistructured Biological Data to XML Data and Knowledge Engineering Journal (DKE) 52(2): pp. 249-271, Elsevier Science |
- |
6 | Nov 2004 | Song Yang, S S Bhowmick |
BioDiff: An Effective Fast Change Detection Algorithm for Genomic and Proteomic Data |
|
5 | Nov 2003 | S S Bhowmick, Vivek Vedagiri, Amey Laud |
HyperThesis: The gRNA Spell on the Curse of Bioinformatics Applications Integration |
Acceptance rate 15% |
4 | Sep 2003 | S S Bhowmick, Dadabhai T Singh, Amey Laud |
Data Management Issues in Metaboloinformatics - Issues and Challenges |
|
3 | Mar 2003 | S S Bhowmick, Pedro Cruz, Amey Laud |
XomatiQ: Living with Genomes, Proteomes, Relations and a Little Bit of XML |
|
2 | Aug 2002 | A Laud, S S Bhowmick, P Cruz, D T Singh, G Rajesh |
The gRNA: A Highly Programmable Infrastructure for Prototyping, Developing and Deploying Genomics-Centric Applications |
|
1 | Jun 2002 | S S Bhowmick, Pedro Cruz, A Laud |
Warehousing and Querying Biological Data using the gRNA |